Random thought: this is an obvious observation to make, but the prophecies Kronos and Zeus receive as regards their threatening offspring are not really equivalent and there are meaningful differences between them.
When it comes to Kronos, the prophecy is very general: „For he had learned from Earth and starry Heaven That it was fated for him, powerful though he was, To be overthrown by his child, through the scheming of Zeus.” (Hesiod, Theogony)
Ignore the „through the scheming of Zeus” part because that is most probably just Hesiod clarifying things for us, the audience. Here is another variant: „… since both Earth and Sky foretold him that he would be dethroned by his own son, he used to swallow his offspring at birth.” (Apollodoros, Library); And another: „There was delivered to Kronos an oracle regarding the birth of Zeus which stated that the son who would be born to him would wrest the kingship from him by force.” (Diodoros of Sicily, Library of History).
So Kronos learns that a child of his will dethrone him, no real specifics.
Compare it to this: „for it was predestined That very wise children would be born from Metis, First the gray-eyed girl, Tritogeneia, Equal to her father in strength and wisdom, But then a son with an arrogant heart Who would one day be king of gods and men.” (Hesiod, Theogony)
Another account: „… after having the girl who was due to be born to her, Metis would give birth to a son who would become the ruler of heaven. (Apollodoros, Library)
Notice how Zeus himself is not actually mentioned here? The prophecy is about the goddess's children, not necessarily about his. Also notice the precise details. We know the number of children she is going to have, that her son is the dangerous one, and that the son would be born after a daughter.
In another variant (Hes. Fr. 343) things are more vague and Zeus fears that she might bring forth something stronger than the thunderbolt, but we also have a variant (schol. bT ad Il. 8.39) where he cannibalizes the pregnant Metis even though her child is not his. Interestingly, in this account she is pregnant by the Kyklops Brontes, whose name happens to mean „Thunder” and who is one of the beings who create thunderbolts for Zeus.
Let's also look at another prophecy: „Wise Themis spoke in their midst and said that it was fated that the sea-goddess [Thetis] should bear a princely son, stronger than his father, who would wield another weapon in his hand more powerful than the thunderbolt or the irresistible trident, if she lay with Zeus or one of his brothers.” (Pindar, Isthmean 8)
There are far more mentions about this son of Thetis in ancient Greek literature than there are about Metis and hers, way too many to talk about all of them here, but this one example should suffice. The prophecy is specifically about Thetis herself, and that is why making it so that her child is conceived by a mortal man fixes the issue.
TL;DR: The prophecy Kronos receives is about himself and his own child, the most specific detail he gets in some variants is that it will be one of his male offspring. The ones received by Zeus are about one of his (actual or potential) sexual partners and their sons. Kronos is at such a clear disadvantage here.